Ports marked with a ^* actually reside within another category but have science listed as a secondary category.

p5-Physics-Unit Manipulate Physics units and dimensions

0.60 0.60Version of this port present on the latest quarterly branch.

Maintainer: perl@FreeBSD.org

Port Added: 2010-09-09 00:26:42

Also Listed In: perl5

License: WTFPL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• p5-Physics-Unit>0:science/p5-Physics-Unit

p5-Quantum-Superpositions QM-like superpositions in Perl

2.03^* 2.03Version of this port present on the latest quarterly branch.

Maintainer: bofh@FreeBSD.org

Port Added: 2006-06-01 07:27:37

Also Listed In: lang perl5

License: ART10 GPLv1+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• p5-Quantum-Superpositions>0:lang/p5-Quantum-Superpositions

packmol Creates Initial Configurations for Molecular Dynamics Simulations

21.2.3 21.2.3Version of this port present on the latest quarterly branch.

Maintainer: eduardo@FreeBSD.org

Port Added: 2019-09-22 19:06:51

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• packmol>0:science/packmol

pagmo2 Platform to perform parallel computations of optimization tasks

2.19.1_7 2.19.1_7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-05-01 09:38:33

License: GPLv3 LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• pagmo2>0:science/pagmo2

paje Generic visualization tool for GNUstep (Gantt chart and more)

1.97_13 1.97_13Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2006-09-28 19:32:13

Also Listed In: gnustep

License: LGPL21

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• paje>0:science/paje

paraview Powerful scientific data visualization application

6.0.1_8 6.0.1_8Version of this port present on the latest quarterly branch.

Maintainer: thierry@FreeBSD.org

Port Added: 2005-06-14 05:42:04

People watching this port, also watch:: vtk9, SparseBitSet, py312-cysignals, python

Also Listed In: graphics

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• paraview>0:science/paraview

parmgridgen Library for obtaining a sequence of successive coarse grids

1.0_17^* 1.0_17Version of this port present on the latest quarterly branch.

Maintainer: devel@stasyan.com

Port Added: 2010-12-15 16:48:35

Also Listed In: math

License: not specified in port

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• parmgridgen>0:math/parmgridgen

parthenon Portable block-structured Adaptive Mesh Refinement (AMR) framework

24.08_5 24.08_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-09-07 20:45:04

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• parthenon>0:science/parthenon

pastix PaStiX: a sparse direct solver

6.3.2_4 6.3.2_3Version of this port present on the latest quarterly branch.

Maintainer: thierry@FreeBSD.org

Port Added: 2022-04-24 08:33:25

People watching this port, also watch:: vtk9, SparseBitSet, py312-cysignals, python

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• pastix>0:science/pastix

pcmsolver API for the Polarizable Continuum Model

1.3.0_2 1.3.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2017-11-14 18:05:52

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• pcmsolver>0:science/pcmsolver

phasar LLVM-based static analysis framework

2604^* 2503_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-01-16 05:39:08

Also Listed In: devel

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• phasar>0:devel/phasar

phonopy Package for phonon calculations at harmonic and quasi-harmonic levels

4.0.0 4.0.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-08-05 17:12:46

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• phonopy>0:science/phonopy

plplot Scientific plotting package

5.15.0_8^* 5.15.0_8Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: unknown

People watching this port, also watch:: lsof, zsh, cscope

Also Listed In: math

License: LGPL21+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• plplot>0:math/plplot

plumed PLUgin for MolEcular Dynamics

2.10.1 2.10.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-05-04 19:56:15

Also Listed In: graphics

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• plumed>0:science/plumed

pnetcdf Library providing high-performance I/O

1.15.0 1.14.1_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2007-04-30 13:45:01

People watching this port, also watch:: hourglass

Also Listed In: parallel

License: NetCDF

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• pnetcdf-mpich>0:science/pnetcdf

polytope Library for generating Voronoi and Voronoi-like tessellations

0.7.5 0.7.5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-12-03 09:51:06

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• polytope>0:science/polytope

praat Speech analysis tool used for doing phonetics by computer

6.4.67^* 6.4.67Version of this port present on the latest quarterly branch.

Maintainer: adridg@FreeBSD.org

Port Added: 2006-04-03 02:35:33

People watching this port, also watch:: exifprobe, afni, qgis

Also Listed In: audio

License: GPLv3+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• praat>0:audio/praat

precice Coupling library for partitioned multi-physics simulations

3.4.1 3.1.2_4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-20 16:54:17

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• precice>0:science/precice

psi4 Open-source suite of ab initio quantum chemistry programs

1.11 1.10.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-11-26 11:18:14

License: LGPL3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• psi4>0:science/psi4

pulseview GUI client that supports various hardware logic analyzers

0.4.2_8 0.4.2_8Version of this port present on the latest quarterly branch.

There is no maintainer for this port.

Any concerns regarding this port should be directed to the FreeBSD Ports mailing list via ports@FreeBSD.org

Port Added: 2014-07-31 23:22:50

People watching this port, also watch:: arduino, sigrok-cli, eclipse

Also Listed In: cad

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• pulseview>0:science/pulseview

py-GPy Gaussian process toolbox

1.13.2_2 1.13.2_2Version of this port present on the latest quarterly branch.

BROKEN: fails to build with NumPy 2.x
IGNORE: is marked as broken: fails to build with NumPy 2.x

Maintainer: yuri@FreeBSD.org

Port Added: 2018-12-18 06:24:30

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}GPy>0:science/py-GPy@${PY_FLAVOR}

py-GPyOpt Bayesian optimization toolbox based on GPy

1.2.6_4 1.2.6_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-12-18 06:36:36

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}GPyOpt>0:science/py-GPyOpt@${PY_FLAVOR}

py-HepMC3 Event record for High Energy Physics Monte Carlo generators/simulation

3.3.1 3.3.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-04-17 08:48:13

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}HepMC3>0:science/py-HepMC3@${PY_FLAVOR}

py-HofstadterTools Package for analyzing the Hofstadter model of particles in the lattice

1.0.7 1.0.7Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-04-19 19:30:17

Also Listed In: python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}HofstadterTools>0:science/py-HofstadterTools@${PY_FLAVOR}

py-MDAnalysis Python library to analyze molecular dynamics trajectories

2.10.0_2 2.10.0_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-05-14 00:15:59

Also Listed In: python

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}MDAnalysis>0:science/py-MDAnalysis@${PY_FLAVOR}

py-MDAnalysisTests Test code and the trajectory data for test cases of MDAnalysis

2.10.0_1 2.10.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-05-14 00:17:22

Also Listed In: python

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}MDAnalysisTests>0:science/py-MDAnalysisTests@${PY_FLAVOR}

py-OpenFermion Electronic structure package for quantum computers

1.8.1 1.7.1_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-03-26 09:39:54

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}OpenFermion>0:science/py-OpenFermion@${PY_FLAVOR}

py-OpenFermion-Dirac Interface between OpenFermion and Dirac

g20220812_3 g20220812_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-11 22:54:05

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}OpenFermion-Dirac>0:science/py-OpenFermion-Dirac@${PY_FLAVOR}

py-OpenFermion-PySCF Interface between OpenFermion and PySCF

0.5_3 0.5_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-12 00:12:09

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}py-OpenFermion-PySCF>0:science/py-OpenFermion-PySCF@${PY_FLAVOR}

py-OpenMC Monte Carlo neutron and photon transport simulation code (Python)

0.16.0 0.15.0_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-10-11 15:54:24

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}openmc>0:science/py-OpenMC@${PY_FLAVOR}

py-PubChemPy Simple Python wrapper around the PubChem PUG REST API

1.0.5 1.0.5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-07-27 13:18:09

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}PubChemPy>0:science/py-PubChemPy@${PY_FLAVOR}

py-PyFR Framework for solving advection-diffusion type problems

3.1_2 3.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-21 07:11:24

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}PyFR>0:science/py-PyFR@${PY_FLAVOR}

py-PyNE PyNE: The Nuclear Engineering Toolkit

0.7.8.226 0.7.8_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-10-10 05:24:06

License: BSD2CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}PyNE>0:science/py-PyNE@${PY_FLAVOR}

py-SimpleSpectral Simplified scipy.signal.spectral module with only pyFFTW support

1.0.0_6 1.0.0_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-18 02:34:11

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}SimpleSpectral>0:science/py-SimpleSpectral@${PY_FLAVOR}

py-abipy Library for analyzing the results produced by ABINIT

1.0.0 1.0.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-06-16 00:38:04

Also Listed In: python

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}abipy>0:science/py-abipy@${PY_FLAVOR}

py-access Calculate spatial accessibility metrics

1.1.10_1 1.1.10_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-01-03 20:28:20

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}access>0:science/py-access@${PY_FLAVOR}

py-app-model Generic application schema implemented in python

0.5.1^* 0.5.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-12-13 02:15:21

Also Listed In: devel

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}app-model>0:devel/py-app-model@${PY_FLAVOR}

py-arbor Multi-compartment neural network simulation library

0.12.1 0.12.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-11-27 10:17:41

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}arbor>0:science/py-arbor@${PY_FLAVOR}

py-arch Autoregressive Conditional Heteroskedasticity (ARCH) models

8.0.0_1 8.0.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-12-26 21:03:13

Also Listed In: finance python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}arch>0:science/py-arch@${PY_FLAVOR}

py-asap3 Classical potentials for MD with ASE

3.13.11_2 3.13.11_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-06-19 10:03:10

Also Listed In: python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}asap3>0:science/py-asap3@${PY_FLAVOR}

py-asdf Python tools to handle ASDF files

5.3.1 5.3.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2019-01-17 19:21:47

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}asdf>0:science/py-asdf@${PY_FLAVOR}

py-asdf-standard ASDF Standard schemas

1.5.0 1.5.0Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2022-03-07 18:19:30

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}asdf-standard>0:science/py-asdf-standard@${PY_FLAVOR}

py-asdf-transform-schemas ASDF schemas for transforms

0.6.0 0.6.0Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2022-03-07 18:19:36

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}asdf-transform-schemas>0:science/py-asdf-transform-schemas@${PY_FLAVOR}

py-ase Atomic simulation environment

3.29.0 3.26.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-01 18:18:07

Also Listed In: python

License: LGPL21

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}ase>0:science/py-ase@${PY_FLAVOR}

py-ast2json Convert a python source code into json-dumpable AST data

0.4_1^* 0.4_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-05-19 01:15:07

Also Listed In: devel

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}ast2json>0:devel/py-ast2json@${PY_FLAVOR}

py-atomium Molecular modeller and file parser

1.0.11_6 1.0.11_5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-04 04:09:29

Also Listed In: biology python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}atomium>0:science/py-atomium@${PY_FLAVOR}

py-avogadrolibs Python bindings for Avogadro2 chemistry libraries

2.0.0 2.0.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-10-21 17:52:45

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}avogadrolibs>0:science/py-avogadrolibs@${PY_FLAVOR}

py-bashlex Python parser for bash

0.18^* 0.18Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-03-31 09:15:34

Also Listed In: devel

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}bashlex>0:devel/py-bashlex@${PY_FLAVOR}

py-boutdata Python package for collecting BOUT++ data

0.4.0_2 0.4.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-12-24 11:33:05

Also Listed In: education

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}boutdata>0:science/py-boutdata@${PY_FLAVOR}

py-boututils Python package containing BOUT++ utils

0.2.1_2 0.2.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-12-24 11:09:35

Also Listed In: education

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}boututils>0:science/py-boututils@${PY_FLAVOR}

py-cdo Python binding to CDO (Climate Data Operators)

1.6.0_1 1.6.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2014-09-13 15:19:57

Also Listed In: python

License: GPLv2

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cdo>0:science/py-cdo@${PY_FLAVOR}

py-cfgrib Map GRIB files to the NetCDF Common Data Model following the CF Convention using ecCodes

0.9.15.1_2 0.9.15.1_2Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2023-02-05 15:54:38

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cfgrib>0:science/py-cfgrib@${PY_FLAVOR}

py-chainer Deep learning framework

7.8.1_16 7.8.1_15Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-08-08 20:07:10

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}chainer>0:science/py-chainer@${PY_FLAVOR}

py-chainer-chemistry Library for deep learning in biology and chemistry

0.7.1_5 0.7.1_4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2019-08-08 21:06:54

Also Listed In: biology

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}chainer-chemistry>0:science/py-chainer-chemistry@${PY_FLAVOR}

py-chempy Package useful for solving problems in chemistry

0.10.1_5 0.10.1_3Version of this port present on the latest quarterly branch.

DEPRECATED: Depends on expiring math/py-pygslodeiv2 (EXTRAS option)
EXPIRATION DATE: 2026-09-15

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-19 21:33:45

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}chempy>0:science/py-chempy@${PY_FLAVOR}

py-cibuildwheel Build Python wheels on CI with minimal configuration

4.1.1^* 2.23.2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-03-31 16:46:52

Also Listed In: devel

License: BSD2CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cibuildwheel>0:devel/py-cibuildwheel@${PY_FLAVOR}

py-cirq-aqt Cirq module to run on AQT quantum computers

1.7.0 1.6.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-07-28 17:15:06

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cirq-aqt>0:science/py-cirq-aqt@${PY_FLAVOR}

py-cirq-core Framework for Noisy Intermediate Scale Quantum (NISQ) circuits

1.7.0 1.6.1_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-07-26 22:39:08

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cirq-core>0:science/py-cirq-core@${PY_FLAVOR}

py-cirq-google Google Cirq adapter for IQM's quantum architectures

1.7.0 1.6.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-07-26 22:39:08

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cirq-google>0:science/py-cirq-google@${PY_FLAVOR}

py-cirq-ionq Cirq module to run on IonQ quantum computers

1.7.0 1.6.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-07-28 17:15:06

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cirq-ionq>0:science/py-cirq-ionq@${PY_FLAVOR}

py-cirq-pasqal Cirq module to run on pasqal quantum computers

1.7.0 1.6.1_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-07-28 17:15:06

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cirq-pasqal>0:science/py-cirq-pasqal@${PY_FLAVOR}

py-cirq-web Cirq module to visualize quantum circuits in 3D in a web browser

1.7.0 1.6.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-13 15:48:06

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}cirq-web>0:science/py-cirq-web@${PY_FLAVOR}

py-coards COARDS compliant time parser

1.0.5_4 1.0.5_4Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2013-06-15 19:08:54

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}coards>0:science/py-coards@${PY_FLAVOR}

py-colorcet Useful perceptually uniform colormaps for plotting scientific data

3.2.1^* 3.1.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-09-30 01:54:28

Also Listed In: graphics python

License: CC-BY-4.0

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}colorcet>0:graphics/py-colorcet@${PY_FLAVOR}

py-corner Make some beautiful corner plots

2.3.0 2.2.3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-10-16 23:18:07

Also Listed In: graphics python

License: BSD2CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}corner>0:science/py-corner@${PY_FLAVOR}

py-deap Distributed Evolutionary Algorithms in Python

1.4.4^* 1.4.4Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2018-12-07 07:46:27

Also Listed In: biology devel math python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}deap>0:math/py-deap@${PY_FLAVOR}

py-dftbplus DFTB+: Package for performing fast atomistic simulations

25.1 25.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-06-04 20:33:40

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dftbplus>0:science/py-dftbplus@${PY_FLAVOR}

py-dftd4 Python API of the DFT-D4 project

4.2.0 4.2.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-08-03 07:03:21

Also Listed In: python

License: GPLv3

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dftd4>0:science/py-dftd4@${PY_FLAVOR}

py-dimod DWave: Shared API for QUBO/Ising samplers

0.12.22 0.12.22Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 05:15:12

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dimod>0:science/py-dimod@${PY_FLAVOR}

py-dipy Python toolbox for analysis of MR diffusion imaging

1.12.1 1.10.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2021-01-21 03:22:01

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dipy>0:science/py-dipy@${PY_FLAVOR}

py-dlib Machine learning framework written in C++ (python bindings)

20.0.1 20.0.1Version of this port present on the latest quarterly branch.

Maintainer: arrowd@FreeBSD.org

Port Added: 2018-04-26 20:39:46

Also Listed In: devel math python

License: BSL

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dlib>0:science/py-dlib@${PY_FLAVOR}

py-dwave-cloud-client DWave: REST interface to communicate with D-Wave Solver API servers

0.14.6_2 0.14.6_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 18:40:05

Also Listed In: python www

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-cloud-client>0:science/py-dwave-cloud-client@${PY_FLAVOR}

py-dwave-gate DWave: Gate model library

0.3.5 0.3.5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2025-09-28 01:42:09

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-gate>0:science/py-dwave-gate@${PY_FLAVOR}

py-dwave-graphs D-Wave: Library for graph theory and algorithms

1.0.0 Package not present on quarterly.This port was created during this quarter. It will be in the next quarterly branch but not the current one.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-07-20 02:06:13

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-graphs>0:science/py-dwave-graphs@${PY_FLAVOR}

py-dwave-greedy DWave: Greedy binary quadratic model solvers

0.3.0_3 0.3.0_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 21:39:39

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-greedy>0:science/py-dwave-greedy@${PY_FLAVOR}

py-dwave-hybrid DWave: Hybrid asynchronous decomposition sampler prototype framework

0.6.16 0.6.16Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-16 03:00:28

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-hybrid>0:science/py-dwave-hybrid@${PY_FLAVOR}

py-dwave-inspector DWave: Problem Inspector

0.5.5_2 0.5.5_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-15 23:51:06

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-inspector>0:science/py-dwave-inspector@${PY_FLAVOR}

py-dwave-neal DWave: Simulated annealing sampler for general Ising model graphs

0.6.0_3 0.6.0_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 05:42:07

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-neal>0:science/py-dwave-neal@${PY_FLAVOR}

py-dwave-networkx DWave: Extension of the NetworkX Python package for graphs

0.8.19_2 0.8.19_2Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 08:24:07

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-networkx>0:science/py-dwave-networkx@${PY_FLAVOR}

py-dwave-ocean-sdk DWave: Meta-package for D-Wave's Ocean tools

9.4.0 9.4.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-16 03:00:38

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-ocean-sdk>0:science/py-dwave-ocean-sdk@${PY_FLAVOR}

py-dwave-optimization DWave: Nonlinear models for industrial optimization problems

0.7.2 0.7.1_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-07-15 07:21:27

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-optimization>0:science/py-dwave-optimization@${PY_FLAVOR}

py-dwave-preprocessing DWave: Preprocessing tools to aid in solving binary quadratic models

0.6.11_2 0.6.11_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 18:39:10

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-preprocessing>0:science/py-dwave-preprocessing@${PY_FLAVOR}

py-dwave-samplers DWave: Classical algorithms for solving binary quadratic models

1.8.0 1.8.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 05:15:31

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-samplers>0:science/py-dwave-samplers@${PY_FLAVOR}

py-dwave-system DWave: API for incorporating the D-Wave system as a sampler

1.35.0 1.35.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 21:39:33

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-system>0:science/py-dwave-system@${PY_FLAVOR}

py-dwave-tabu DWave: Tabu solver for QUBO/Ising problems

0.5.0_3 0.5.0_3Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-14 06:03:11

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwave-tabu>0:science/py-dwave-tabu@${PY_FLAVOR}

py-dwavebinarycsp DWave: Map CSP with binary variables to binary quadratic models

0.3.1 0.3.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-08-15 23:51:12

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}dwavebinarycsp>0:science/py-dwavebinarycsp@${PY_FLAVOR}

py-earthpy Plot and manipulate spatial data in Python

0.9.4_7 0.9.4_6Version of this port present on the latest quarterly branch.

Maintainer: thierry@FreeBSD.org

Port Added: 2022-11-04 12:00:10

Also Listed In: geography python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}earthpy>0:science/py-earthpy@${PY_FLAVOR}

py-eccodes Python interface to the ecCodes BUFR and GRIB de/encoder

2.47.0_1 2.47.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-12-19 20:08:32

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}eccodes>0:science/py-eccodes@${PY_FLAVOR}

py-emmet-core Materials API Toolkit for the Materials Project

0.87.1_1 0.64.0_1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-07-03 17:51:04

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}emmet-core>0:science/py-emmet-core@${PY_FLAVOR}

py-endf Python interface to ENDF-6 and ACE format nuclear data files

0.1.12 Package not present on quarterly.This port was created during this quarter. It will be in the next quarterly branch but not the current one.

Maintainer: yuri@FreeBSD.org

Port Added: 2026-08-07 05:12:20

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}endf>0:science/py-endf@${PY_FLAVOR}

py-esda Exploratory Spatial Data Analysis

2.10.0 2.9.0_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2021-01-03 20:33:34

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}esda>0:science/py-esda@${PY_FLAVOR}

py-fire Library for automatically generating command line interfaces (CLIs)

0.7.1^* 0.7.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2023-09-11 03:42:25

Also Listed In: devel

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}fire>0:devel/py-fire@${PY_FLAVOR}

py-fonticon-fontawesome6 FontAwesome 6 extension for superqt font icons

6.4.0^* 6.4.0Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2024-12-13 04:24:07

Also Listed In: x11-toolkits

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}fonticon-fontawesome6>0:x11-toolkits/py-fonticon-fontawesome6@${PY_FLAVOR}

py-fresnel Publication quality path tracing in real time

0.13.8 0.13.8Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-01-24 17:15:04

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}fresnel>0:science/py-fresnel@${PY_FLAVOR}

py-gemmi Macromolecular crystallography library and utilities

0.7.5 0.7.5Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2022-10-04 01:36:50

Also Listed In: python

License: MPL20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}gemmi>0:science/py-gemmi@${PY_FLAVOR}

py-geolinks Utilities to deal with geospatial links

0.2.3_1 0.2.3_1Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2020-01-18 18:24:10

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}geolinks>0:science/py-geolinks@${PY_FLAVOR}

py-geomet GeoJSON <-> WKT/WKB conversion utilities

1.1.0 1.1.0Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2019-12-29 12:48:50

Also Listed In: python

License: APACHE20

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}geomet>0:science/py-geomet@${PY_FLAVOR}

py-geometer Python geometry package based on projective geometry and numpy

0.4.2_3 0.4.2_3Version of this port present on the latest quarterly branch.

Maintainer: sunpoet@FreeBSD.org

Port Added: 2019-03-17 18:21:58

Also Listed In: python

License: MIT

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}geometer>0:science/py-geometer@${PY_FLAVOR}

py-geometric Geometry optimization for quantum chemistry

1.1.1 1.1.1Version of this port present on the latest quarterly branch.

Maintainer: yuri@FreeBSD.org

Port Added: 2020-09-13 20:08:50

Also Listed In: python

License: BSD3CLAUSE

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}geometric>0:science/py-geometric@${PY_FLAVOR}

py-gpaw DFT and beyond within the projector-augmented wave method in chemistry

25.7.0 25.7.0Version of this port present on the latest quarterly branch.

BROKEN: fails to build with NumPy 2.x
IGNORE: is marked as broken: fails to build with NumPy 2.x

Maintainer: yuri@FreeBSD.org

Port Added: 2018-09-01 18:32:08

Also Listed In: python

License: GPLv3+

USE_RC_SUBR (Service Scripts)

• no SUBR information found for this port

Dependency lines:

• ${PYTHON_PKGNAMEPREFIX}gpaw>0:science/py-gpaw@${PY_FLAVOR}